Package: rEDM 1.15.4
rEDM: Empirical Dynamic Modeling ('EDM')
An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Authors:
rEDM_1.15.4.tar.gz
rEDM_1.15.4.tgz(r-4.4-x86_64)rEDM_1.15.4.tgz(r-4.4-arm64)rEDM_1.15.4.tgz(r-4.3-x86_64)rEDM_1.15.4.tgz(r-4.3-arm64)
rEDM_1.15.4.tar.gz(r-4.5-noble)rEDM_1.15.4.tar.gz(r-4.4-noble)
rEDM_1.15.4.tgz(r-4.4-emscripten)rEDM_1.15.4.tgz(r-4.3-emscripten)
rEDM.pdf |rEDM.html✨
rEDM/json (API)
NEWS
| # Install 'rEDM' in R: |
| install.packages('rEDM', repos = c('https://softwareliteracy.r-universe.dev', 'https://cloud.r-project.org')) |
- EvergladesFlow - Water flow to NE Everglades
- Lorenz5D - 5-D Lorenz'96
- TentMap - Time series for a tent map with mu = 2.
- TentMapNoise - Time series of tent map plus noise.
- Thrips - Apple-blossom Thrips time series
- block_3sp - Time series for a three-species coupled model.
- circle - 2-D timeseries of a circle.
- paramecium_didinium - Time series for the Paramecium-Didinium laboratory experiment
- sardine_anchovy_sst - Time series for the California Current Anchovy-Sardine-SST system
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 months agofrom:72d86ce773. Checks:OK: 1 WARNING: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 03 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 03 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 03 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 03 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 03 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 03 2024 |
Exports:CCMComputeErrorEmbedEmbedDimensionMakeBlockMultiviewPredictIntervalPredictNonlinearSimplexSMapSurrogateData
Dependencies:RcppRcppThread
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Time series for a three-species coupled model. | block_3sp |
| Convergent cross mapping using simplex projection | CCM |
| 2-D timeseries of a circle. | circle |
| Compute error | ComputeError |
| Embed data with time lags | Embed |
| Optimal embedding dimension | EmbedDimension |
| Water flow to NE Everglades | EvergladesFlow |
| 5-D Lorenz'96 | Lorenz5D |
| Make embedded data block | MakeBlock |
| Forecasting using multiview embedding | Multiview |
| Time series for the Paramecium-Didinium laboratory experiment | paramecium_didinium |
| Forecast interval accuracy | PredictInterval |
| Test for nonlinear dynamics | PredictNonlinear |
| Empirical dynamic modeling | rEDM-package EDM |
| Time series for the California Current Anchovy-Sardine-SST system | sardine_anchovy_sst |
| Simplex forecasting | Simplex |
| SMap forecasting | SMap |
| Generate surrogate data for permutation/randomization tests | SurrogateData |
| Time series for a tent map with mu = 2. | TentMap |
| Time series of tent map plus noise. | TentMapNoise |
| Apple-blossom Thrips time series | Thrips |
